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affy mas5
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Affe package mas5 error
affy
affy mas5
6.5 years ago
yuyingxie
• 0
2
votes
6
replies
1.6k
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mas5 normalization gives negative values
affy mas5
updated 8.7 years ago by
James W. MacDonald
67k • written 8.7 years ago by
Angel
▴ 40
0
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8
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1.7k
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mas5calls error question
mas5 affy
mas5
affy mas5
mas5calls
affy
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
suarez.samuel
• 0
8
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16
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3.5k
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matrix transposing in R
affy mas5
updated 9.3 years ago by
arfranco
▴ 130 • written 9.4 years ago by
Angel
▴ 40
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Comment: Volcano plot has many values around zero
by
Michael Love
42k
It's positive over zero or nearly so.
Answer: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.
Comment: Volcano plot has many values around zero
by
mjun
• 0
Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks
Comment: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…
Votes
Comment: Weird looking volcano plot
Volcano plot has many values around zero
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
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